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Matthews, Cory; Ruiz-Cooley, Iliana; Pomerleau, Corinne; Ferguson, Steven 2021-02-10 <ol> <li>Compound specific stable isotope analysis (CSIA) of amino acids (AAs) has been rapidly incorporated in ecological studies to resolve consumer trophic position (TP). Differential <sup>15</sup>N fractionation of ‘trophic’ AAs, which undergo <sup>15</sup>N enrichment with each trophic step, and ‘source’ AAs, which undergo minimal trophic <sup>15</sup>N enrichment and serve as a proxy for primary producer δ<sup>15</sup>N values, allows for internal calibration of TP. Recent studies, however, have shown the difference between source and trophic AA δ<sup>15</sup>N values in higher marine consumers is less than predicted from empirical studies of invertebrates and fish.</li> <li>To evaluate CSIA-AA for estimating TP of cetaceans, we compared source and trophic AA δ<sup>15</sup>N values of multiple tissues (skin, baleen, and dentine collagen) from five species representing a range of TPs: bowhead whales, beluga whales, short-beaked common dolphins, sperm whales, and fish-eating (FE) and marine mammal-eating (MME) killer whale ecotypes.</li> <li>TP estimates (TP<sub>CSIA</sub>) using several empirically-derived equations and trophic discrimination factors (TDFs) were 1 to 2.5 trophic steps lower than stomach content-derived estimates (TP<sub>SC</sub>) for all species. Although TP<sub>CSIA</sub> estimates using dual TDF equations were in better agreement with TP<sub>SC</sub> estimates for bowhead whales, belugas, and FE killer whales, our data do not support the application of a universal or currently available dual TDFs to estimate cetacean TPs. Discrepancies were not simply due to inaccurate TDFs, however, because the difference between consumer glutamic acid (Glu) and phenylalanine (Phe) δ<sup>15</sup>N values (δ<sup>15</sup>N<sub>Glu-Phe</sub>) did not follow expected TP order, indicating it is not a reliable index of relative TP in these species.</li> <li>In contrast with pioneering studies on invertebrates and fish, our data suggest trophic <sup>15</sup>N enrichment of Phe is not negligible and should be examined among the potential mechanisms driving ‘compressed’ and variable δ<sup>15</sup>N<sub>Glu-Phe</sub> values at high TPs. We emphasize the need for controlled diet studies to clearly understand mechanisms driving AA-specific isotopic fractionation before widespread application of CSIA-AA in ecological studies of cetaceans and other marine consumers.</li> </ol>
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Dryad
Ferguson, Steven; Yurkowski, David; Hudson, Justine; Edkins, Tera; Willing, Cornelia; Watt, Cortney 2022-11-12 <p>Identification of phenotypic characteristics in reproductively successful individuals provides important insights into the evolutionary processes that cause range shifts due to environmental change. Female beluga whales (Delphinapterus leucas) from the Baffin Bay region (BB) of the Canadian Arctic in the core area of the species’ geographic range have larger body size than their conspecifics at the southern range periphery in Hudson Bay (HB). We investigated the mechanism for this north and south divergence as it relates to ovarian reproductive activity (ORA = total corpora) that combines morphometric data with ovarian corpora counted from female reproductive tracts. Our study aim was to assess the relative influence of age and body size of female beluga whale on ovarian reproductive activity in the two populations. Female beluga whale ORA increased more quickly with age (63% partial variation explained) in BB than in HB (41%). In contrast, body length in HB female beluga whales accounted for considerably more of the total variation (12 vs 1%) in ORA compared to BB whales. We speculate that female HB beluga whale ORA was more strongly linked with body length due to higher population density resulting in food competition that favors the energetic advantages of larger body size during seasonal food limitations. Understanding the evolutionary mechanism of how ORA varies across a species’ range will assist conservation efforts in anticipating and mitigating future challenges associated with a warming planet.</p>
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Zenodo
de Greef, Evelien; Müller, Claudio; Thorstensen, Matt; Ferguson, Steven; Watt, Cortney; Marcoux, Marianne; Petersen, Stephen; Garroway, Colin 2024-09-20 This dataset contains resequencing data used in our Arctic whale genomics research exaiming population structure and demographic history in bowhead whales and narwhal, including unfiltered genomic variants and filtered SNPs. Source code for genomic analyses is available at github.com/edegreef/arctic-whales-resequencing. Data uploaded here contain: bowhead_sample_info.csv - metadata for bowhead whale samples bowhead_RWmap_allvariants.vcf.gz - all variant calls in bowhead whales, including indels and SNPs (n = 21) bowhead_RWmap_snps.filtered.autosomes.vcf.gz - bowhead whale SNPs filtered for quality, bi-allelic sites, and autosomes (n = 21) bowhead_RWmap_snps.filtered.autosomes.hwe_maf_LDprunedr08_n20.vcf.gz - bowhead whale SNPs filtered for quality, bi-allelic sites, out of HWE, MAF > 0.05, LD-pruned, removal of close kin (n = 20). narwhal_sample_info.csv - metadata for narwhal samples narwhal_allvariants.vcf.gz - all variant calls in narwhals, including indels and SNPs for bowhead whales (n = 62*) narwhal_snps.filtered.autosomes.vcf.gz - narwhal SNPs filtered for quality, bi-allelic sites, and autosomes (n = 62*) narwhal_snps.filtered.autosomes.hwe_maf_LDprunedr08_n57.vcf.gz - narwhal SNPs filtered for quality, bi-allelic sites, out of HWE, MAF > 0.05, LD-pruned, removal of duplicates, close kin, and samples with high missingness (n = 57) The asterisk* is to note this includes 2 duplicate samples that were removed from the analyses and respective manuscript. https://creativecommons.org/licenses/by/4.0/legalcode

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