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Van Leeuwen, Pauline; Mastromonaco, Gabriela; Mykytczuk, Nadia; Schulte-Hostedde, Albrecht 2020-12-07 Microbes can have important impacts on their host’s survival. Captive breeding programs for endangered species include periods of captivity that can ultimately have an impact on reintroduction success. No study to date has investigated the impacts of captive diet on the gut microbiota during the relocation process of generalist species. This study simulated a captive breeding program with white-footed mice (Peromyscus leucopus) to describe the variability in gut microbial community structure and composition during captivity and relocation in their natural habitat, and compared it to wild individuals. Mice born in captivity were fed two different diets, a control with dry standardized pellets, and a treatment with non-processed components that reflect a version of their wild diet that could be provided in captivity. The mice from the two groups were then relocated to their natural habitat. Relocated mice that had the treatment diet had more phylotypes in common with the wild-host microbiota than mice under the control diet or mice kept in captivity. These results have broad implications for our understanding of microbial community dynamics and the effects of captivity on reintroduced animals, including the potential impact on the survival of endangered species. This study demonstrates that ex situ conservation actions should consider a more holistic perspective of an animal’s biology including its microbes.
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Robertson, Joshua; Mastromonaco, Gabriela; Burness, Gary 2020-02-18 <p>Changes in body temperature following exposure to stressors have been documented for nearly two millennia, however, the functional value of this phenomenon is poorly understood. We tested two competing hypotheses to explain stress-induced changes in temperature, with respect to surface tissues. Under the first hypothesis, changes in surface temperature are a consequence of vasoconstriction that occurs to attenuate blood-loss in the event of injury and serves no functional purpose <em>per se</em>; defined as the Haemoprotective Hypothesis. Under the second hypothesis, changes in surface temperature reduce thermoregulatory burdens experienced during activation of a stress response, and thus hold a direct functional value; here, the Thermoprotective Hypothesis. To understand whether stress-induced changes in surface temperature have functional consequences, we tested predictions of the Haemoprotective and Thermoprotective hypotheses by exposing Black-capped Chickadees (n=20) to rotating stressors across an ecologically relevant ambient temperature gradient, while non-invasively monitoring surface temperature (eye region temperature) using infrared thermography. Our results show that individuals exposed to rotating stressors reduce surface temperature and dry heat loss at low ambient temperature and increase surface temperature and dry heat loss at high ambient temperature, when compared to controls. These results support the Thermoprotective Hypothesis and suggest that changes in surface temperature following stress exposure have functional consequences and are consistent with an adaptation. Such findings emphasize the importance of the thermal environment in shaping physiological responses to stressors in vertebrates, and in doing so, raise questions about their suitability within the context of a changing climate.</p>
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Lyons, Jeremy; Mastromonaco, Gabriela; Edwards, Darryl B.; Schulte-Hostedde, Albrecht I. 2017-06-15 Cities are rapidly expanding, and wildlife may experience different selection pressures in urban environments when compared to natural habitats. Phenotypic differences between urban and natural populations may occur because of the altered urban environment. Behavior, the activity of the hypothalamic-pituitary-adrenal (HPA) axis and body condition can be expected to differ between urban and natural habitats. We used the eastern chipmunk (Tamias striatus) to test for differences in behavior assayed from an open field test, hair and fecal cortisol concentrations, and body condition (size-corrected body mass), predicting that urban chipmunks would exhibit more exploratory behavior, higher cortisol concentrations, and higher body condition, than their counterparts from natural habitats. We sampled eastern chipmunks in 2 urban areas paired with natural habitats and subjected adult chipmunks to an open field test, collected hair and fecal samples for the determination of cortisol concentrations, and measured body size and body mass to estimate body condition. Eastern chipmunks in urban habitats had significantly different behavior, tending toward reduced locomotion and grooming, and greater latency, than their counterparts from natural habitats. Urban chipmunks also had lower fecal cortisol concentrations than those from natural habitats, and female chipmunks were in better body condition when captured in urban habitats. These results suggest that urban habitats may be relatively benign for urban chipmunks, perhaps because of reduced need for exploration and the availability of anthropogenic food subsidies associated with urban environments.
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Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude 2023 Additional file 1. Information on 79-mers used for chromosome-level assembly. These Excel files list each oligo with its unique ID and associated probe on a scaffold. The 39-mers genome homologous sequences obtained from running OligoMiner and IFPD scripts are also given with their start and end positions on the scaffold sequence. R_id and F_id are based on 20-mers ID attribution (Additional file 2). The reverse and forward specific 20-mers sequences were assigned according to scaffold number and colour pattern respectively. Each 20-mers forward sequence bears a unique fluorophore (Fluorophore column). Assembled 79-mers oligo sequences were purchased from Genscript. https://creativecommons.org/licenses/by/4.0/legalcode
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Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude 2023 Additional file 2. Orthogonal 20-mers sequences and attribution. Excel file listing the 29 orthogonal 20-mers sequences by ID and used as a reverse or forward primer or a detection oligo. Reverse sequences were used on up to four scaffolds but were unique to a single scaffold in each library. Forward sequences and adapters were used for all libraries. https://creativecommons.org/licenses/by/4.0/legalcode
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Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude 2023 Additional file 3. Primers and detection oligo. Excel file listing the primers used for amplification and transcription reactions and as detection oligo. Reverse primers consist of the 20-mers complementary sequence linked to the 3’ end of the T7 sequence 5’-CGATTGAGGCCGGTAATACGACTCACTATAGGG-3’ [45]. Forward primer 20-mers are linked to the 3’ end of the adapter sequence. The resulting 53-mers reverse primer and 40-mers forward primer oligo were used for PCR. Forward primers were used also for RT-PCR. The fluorophore-linked homolog of the specific 20-mers adapter was the detector of probe binding. These 30 oligo were purchased from IDT as custom standard or HPLC-purified DNA. https://creativecommons.org/licenses/by/4.0/legalcode
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Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude 2023 Additional file 4. Scaffold probe fluorophore associations. Excel file listing the fluorophores used for each scaffold, based on scaffold colour scheme. To create additional colours, some probes were paired with two fluorophores to obtain a mixture. https://creativecommons.org/licenses/by/4.0/legalcode

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