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Pascal, Ludovic; Cool, Joannie; Archambault, Philippe; Calosi, Piero; Cuenca, André L. R.; Mucci, Alfonso O.; Chaillou, Gwénaëlle 2023-10-18 <p><span lang="EN-CA">The O<sub>2 </sub>content of the global ocean has been declining progressively over the past decades, mainly because of human activities and global warming. Nevertheless, how long-term deoxygenation affects macrobenthic communities, sediment biogeochemistry and their mutual feedback remains poorly understood. Here, we evaluate the response of the benthic assemblages and biogeochemical functioning to decreasing O<sub>2 </sub>concentrations along the persistent bottom-water dissolved O<sub>2</sub> gradient of the Estuary and Gulf of St. Lawrence (QC, Canada). We report several of non-linear biodiversity and functional responses to decreasing O<sub>2</sub> concentrations, and identify an O<sub>2</sub> threshold that occurs at approximately at 63 µM. Below this threshold, macrobenthic community assemblages change, and bioturbation rates drastically decrease to near zero. Consequently, the sequence of electron acceptors used to metabolize the sedimentary organic matter is squeezed towards the sediment surface while reduced compounds accumulate closer (as much as 0.5 to 2.5 cm depending on the compound) to the sediment-water interface. Our results illustrate the capacity of bioturbating species to compensate for the biogeochemical consequences of hypoxia and can help to predict future changes in benthic ecosystems.</span></p>
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Borealis
Pascal, Ludovic; Bernatchez, Pascal; Chaillou, Gwénaëlle; Nozais, Christian; Lapointe Saint-Pierre, Mathilde; Archambault, Philippe 2020-01-23 These data include macrofaunal (i.e. > 0.5 mm) densities and biomasses and environmental data from the monitoring of a seagrass meadow located at the Manicouagan peninsula, Quebec, Canada. Sampling occurred during the year 2018 (April, June, August and October). Sample were collected in vegetated areas (V) and in artificial (aTP) and natural (nTP) tidal pools.<br/> Data are organized in five tabular data files (.txt files; separator = tab, decimal = .)<br/> (1) Manicouagan_biomasses.txt includes biomasses (g blotted wet weight/m<sup>2</sup>) of sampled macrofaunal species<br/> (2) Manicouagan_densities.txt includes densities (individuals/m<sup>2</sup>) of sampled macrofaunal species<br/> (3) Manicouagan_porewater_profiles.txt include depth profile of nutrient (NH<sub>4</sub><sup>+</sup>, NO<sub>2</sub> + NO<sub>3</sub><sup>-</sup> and PO<sub>4</sub><sup>3-</sup>) concentrations (µM)<br/> (4) Manicouagan_Sediment_characteristics.txt includes median sediment grain size (D50; µm) sediment porosity (volume ration), particulate organic carbon content (OC; % Dry Weight), particulate total nitrogen content (TN; % DW), sediment chlorophyll a content (chla; µg/g), sediment phaeopigment content (µg/g), Total (Seagrass), above ground (AboGround) and below ground (BelGround) seagrass biomass (g/m<sup>2</sup>) and nutrients (NH<sub>4</sub><sup>+</sup>, NO<sub>2</sub> + NO<sub>3</sub><sup>-</sup> and PO<sub>4</sub><sup>3-</sup>) stock (µmol/m<sup>2</sup>) in the first 8 cm of the sediment column. (5) Manicouagan_Bacteria.txt include extractible bacteria count (Abundance in number of cells per mL of sediment) and fluorescence (green fluorescence, relative unit) in the sediment.
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Borealis
Pascal, Ludovic; Chaillou, Gwénaëlle; Nozais, Christian; Cool, Joannie; Bernatchez, Pascal; Letourneux, Kevin; Archambault, Philippe 2022-02-15 <h1>General description</h1> <p>This dataset include the data collected during two experiments carried out in May and August 2019 to investigate the mechanisms involved in the benthic response to nutrient enrichment in coastal ecosystems.</p> <p>Sample were collected in an intertidal mudflat in Isle-Verte Bay (48° 2’ 36.76” N; 69° 21’ 3.736” W, St. Lawrence estuary, QC, Canada) in vegetated areas (Veg) and ice made-tidal pools (UnV). They were then exposed, in a well-controlled laboratory experiment, to three intensities of nutrient enrichment (N0, N1 and N2) during 30 days.</p> <hr> <h1>Description of the dataset</h1> <p><em>Data are organized in five tabular data files (.txt files; separator = tab, decimal = ., missing data = NA)</em>. Please refer to related publication for experimental design and analytical methods</p> <h3>Sediment_characteristics.txt</h3> <p>This file includes median sediment grain size (D<sub>50</sub>; µm), sediment porosity (volume ratio), Sediment organic matter (SOM; %Loss on ignition), Chlorophyll <em>a</em> content (Chl <em>a</em>; µg g<sup>-1</sup>), phaeopigments (µg g<sup>-1</sup>), Seagrass leaf biomasse (g) and Seagrass leaf elongation (cm day<sup>-1</sup>)</p> <h3>Macrofauna_density.txt</h3> <p>This file includes densities (individuals m<sup>-2</sup>) of sampled macrofaunal species</p> <h3>Bioturbation.txt</h3> <p>This files includes bioturbation metrics such as maximum penetration depth of luminophores (MPD; cm), Biodiffusion coefficient (D<sub>b</sub>; cm<sup>2</sup> y<sup>-1</sup>) and porewater exchange rate (Q; mL m<sup>-2</sup> h<sup>-1</sup>)</p> <h3>Oxygen_dynamics.txt</h3> <p>This file includes diffusive oxygen uptake (J; mmol m<sup>-2</sup> d<sup>-1</sup>) and oxygen penetration depth (Z; µm)</p> <h3>Nutrient_profiles.txt</h3> <p>This file includes porewater nutrient (NH<sub>4</sub><sup>+</sup>, NO<sub>3</sub><sup>-</sup> and PO<sub>4</sub><sup>3-</sup>; µM) profiles within the sediment column (depth; cm)</p> <h3>Benthic_fluxes.txt</h3> <p>This file includes oxygen (TOU) and nutrients ((NH<sub>4</sub><sup>+</sup>, NO<sub>3</sub><sup>-</sup>) benthic fluxes (mmol m<sup>-2</sup> h<sup>-1</sup>)</p>
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UQAR - Institut des sciences de la mer de Rimouski / UQAR - Institut des sciences de la mer de Rimouski
Réseau Québec maritime; Boissonneault, Maude; Pascal, Ludovic; Guillot, Pascal 2023-07-05 The concerted mission on the Coriolis II in July 2023, financed by the [PLAINE program](https://www.rqm.quebec/plaine/) of the Réseau Québec maritime (RQM), aimed to acquire and update strategic knowledge of Quebec's maritime territory. This mission enabled a wide-ranging acquisition of multidisciplinary data for 9 projects focusing on the study of the impact of commercial navigation on ecosystems, and the search for technological solutions to reduce the impact of ports and maritime transport on the environment. Vertical profiles of CTD data (conductivity, temperature, depth) were produced in the water column at 30 stations in the Saguenay Fjord (from the town of Saguenay), the Maritime Estuary and the Gulf of St. Lawrence ( up to south of Anticosti Island). These profiles were taken from the surface to a maximum distance of around 5 m from the seabed. They include measurements of temperature, salinity, density, dissolved oxygen, pH, fluorescence, light transmission, vertical stratification and sound velocity in seawater. Discrete water samples were taken at various stations and depths to compare CTD's direct measurements with laboratory analyses of dissolved oxygen concentration (49 samples, 11 stations, Winkler chemical titration), chlorophyll a concentration (53 samples, 29 stations), and salinity (32 samples, 31 stations). These comparisons were used to adjust the calibration of dissolved oxygen, fluorescence and salinity data from the CTD. La mission concertée sur le Coriolis II de juillet 2023, financée par le [programme PLAINE](https://www.rqm.quebec/plaine/) du Réseau Québec maritime (RQM), avait pour but d’acquérir et d’actualiser les connaissances stratégiques sur le territoire maritime québécois. Cette mission a permis une large acquisition de données multidisciplinaires pour 9 projets centrés autours de l’étude des impacts de la navigation commerciale sur les écosystèmes, et de la recherche de solutions technologiques pour réduire les impacts des milieux portuaires et du transport maritime sur l’environnement. Dans ce cadre, des profils verticaux de données CTD (conductivité, température, profondeur) ont été réalisés dans la colonne d’eau au niveau de 30 stations dans le fjord du Saguenay (depuis la ville de Saguenay), l’estuaire maritime, et le golf du Saint-Laurent (jusqu’au sud de l’île d’Anticosti). Ces profils ont été réalisés de la surface jusqu’à une distance maximale d’environ 5 m du fond marin. Ils intègrent des mesures de température, de salinité, de densité, d’oxygène dissous, de pH, de fluorescence, de transmission de la lumière, de stratification verticale du milieu et de vitesse du son dans l’eau de mer. Des échantillons discrets d’eau ont été réalisés à différentes stations et profondeurs dans le but de comparer les mesures réalisés directement par la CTD à des analyses en laboratoire de la concentration en oxygène dissous (49 échantillons, 11 stations, titration chimique Winkler), de la concentration en chlorophylle a (53 échantillons, 29 stations), et de salinité (32 échantillons, 31 stations). Ces comparaisons ont permis d’affiner les calibrations des données d’oxygène dissous, de fluorescence, et de salinité issues de la CTD. https://creativecommons.org/licenses/by/4.0/
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UQAR - Institut des sciences de la mer de Rimouski / UQAR - Institut des sciences de la mer de Rimouski
Chaillou, Gwénaëlle; Pascal, Ludovic; Turcotte, Olivier; Mucci, Alfonso; Gelinas, Yves 2022-03-30 The overarching objective of the Hypoxia 2021 — C2021-06 cruise is to provide a new and informed assessment of the relationship between the reactivity of natural organic matter and the benthic ecosystem functioning in estuarine environments, with a focus on the hypoxic conditions in the deep waters. For this purpose, the cruise had assembled a team of researchers from three Québec institutions, ISMER-UQAR, McGill University and Concordia University, whose work is largely focused on the fate of the organic matter in natural environments as well as the benthic ecological processes it sustains. This initiative, supported by NSERC's Shiptime Program (NSERC — Shiptime 556538-2021), took place in August 2021 from the Estuary to the Gulf of St. Lawrence and via the Saguenay Fjord. This dataset presents the vertical profiles of practical salinity, temperature, dissolved oxygen, fluorescence, transmissivity, and density of a dozen stations, from the surface to 350 m deep. Although the probes were calibrated by the manufacturer during the year, discrete salinity samples were taken throughout the water column and analyzed on a Guildline Autosal 8400 salinometer calibrated with standard IAPSO (International Association for the Physical Sciences of the Oceans) seawater and CTD profiles reprocessed after the mission. Similarly, dissolved oxygen concentrations were determined by Winkler chemical titration (Grasshoff et al., 1999) on about forty discrete water samples collected directly from Niskin bottles. The relative standard deviation, based on repeated analyses of samples taken from the same Niskin bottle, was less than 1%. These measurements were also used to calibrate the SBE-43 oxygen probe mounted on the rosette. The team on board consisted of 12 people, professors, young researchers and students. A biogeochemical database on discrete water samples is associated with this physicochemical dataset. La mission Hypoxie 2021 – C2021-06 avait pour objectif de fournir une évaluation nouvelle et éclairée de la relation entre la réactivité de la matière organique naturelle et le fonctionnement de l'écosystème benthique dans l’estuaire du Saint-Laurent. À cette fin, la mission a réuni une équipe de chercheuses et chercheurs issu.e.s de trois institutions québécoises, soit l'ISMER-UQAR, l'Université McGill et l'Université Concordia, et dont les travaux sont en grande partie axés sur le devenir de la matière organique dans les milieux naturels ainsi que sur les processus écologiques benthiques qu'elle soutient. Cette initiative supportée par le programme temps navire du CRNSG (CRSNG – temps navire 556538-2021) s'est déroulée en aout 2021 de l'estuaire moyen au golfe du St-Laurent et en passant par le fjord du Saguenay. Ce jeu de données présente les profiles verticaux de salinité pratique, température, oxygène dissous, fluorescence, transmissivité, et densité d'une douzaine de stations, de la surface à 350 m de profondeur. Bien que les sondes soient calibrées par le fabricant au cours de l'année, des échantillons discrets de salinité ont été prélevés dans toute la colonne d'eau et analysés sur un salinomètre Guildline Autosal 8400 calibré avec l'eau de mer standard de l'IAPSO (International Association for the Physical Sciences of the Oceans) et les profils CTD retraités après la mission. De même, les concentrations d'oxygène dissous ont été déterminées par titrage chimique Winkler (Grasshoff et al., 1999) sur une quarantaine d'échantillons d'eau discrets collectés directement dans les bouteilles Niskin. L'écart-type relatif, basé sur des analyses répétées d'échantillons prélevés dans la même bouteille Niskin, était inférieur à 1 %. Ces mesures ont également servi à étalonner la sonde à oxygène SBE-43 montée sur la rosette. L'équipe à bord était composée de 12 personnes, des professeur.e.s, des jeunes chercheur.e.s et étudiant.e.s stagiaires. Une base de données biogéochimiques sur des échantillons d'eau discrets est associée à ce jeu de données physico-chimiques. https://creativecommons.org/licenses/by/4.0/

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