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Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 5. Accession numbers of gut metagenomes from 17 countries. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 1. Description of FMT study and stool samples collected. a Description of FMT donor stool samples and SRA accession numbers. b Description of FMT recipient samples and SRA accession numbers. c Description of transplantation events. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 3. Description of FMT metagenomes and co-assemblies. a Metagenome SRA accession numbers and number of metagenomic short-reads sequenced and mapped to co-assemblies and MAGs. b) Phylum level taxonomic composition of metagenomes. c) Genus level taxonomic composition of metagenomes. d) Summary statistics for contigs from metagenome co-assemblies. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 4. Description of MAGs. a Summary statistics and taxonomic assignments for MAGs. b and c Detection of Donor A and Donor B MAGs in FMT metagenomes, respectively. d and e Detection of Donor A and Donor B MAGs in global gut metagenomes, respectively. f and g Detection summary statistics of Donor A and Donor B MAGs in global gut metagenomes, respectively. h and i Mean non-outlier coverage of Donor A and Donor B MAG single-copy core genes in FMT metagenomes. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 7. MAG subpopulation information. a and b Number of Donor A and Donor B MAG subpopulations detected in FMT metagenomes, respectively. c and d Subpopulation composition of Donor A and Donor B MAGs in FMT metagenomes, respectively. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 8. MAG/recipient pair colonization outcomes and MAG mean coverage in the 2nd and 3rd quartiles in stool samples used for transplantation. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 9. Description of HMI vs. LMI populations. a Taxonomic assignments and genome size estimates for high- and low-metabolic independence populations. b KEGG module completeness information for high- and low-metabolic independence populations. c Raw KEGG module enrichment information for high- and low-metabolic independence populations. d KEGG module enrichment and categorical information for the 33 modules enriched in high-metabolic independence populations. e and f Completeness information for the 33 modules enriched in high-metabolic independence populations in all high- and low-metabolic independence populations. https://creativecommons.org/licenses/by/4.0/legalcode

Watson, Andrea R.; Füssel, Jessika; Veseli, Iva; DeLongchamp, Johanna Zaal; Silva, Marisela; Trigodet, Florian; Lolans, Karen; Shaiber, Alon; Fogarty, Emily; Runde, Joseph M.; Quince, Christopher; Yu, Michael K.; Söylev, Arda; Morrison, Hilary G.; Lee, Sonny T. M.; Kao, Dina; Rubin, David T.; Jabri, Bana; Louie, Thomas; Eren, A. Murat — 2023 Additional file 10. a List of genomes from healthy individuals and individuals with IBD. b Module completion values across genomes. https://creativecommons.org/licenses/by/4.0/legalcode