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2020-10-01 Understanding the mechanisms that prevent or promote the coexistence of taxa at local scales is critical to understanding how biodiversity is maintained. Competitive exclusion and environmental filtering are two processes thought to limit which taxa become established in a community. However, determining the relative importance of the two processes is a complex task, especially when the critical initial stages of colonization cannot be directly observed. Here, we explore the use of phylogenetic community structure for identifying filtering mechanisms in a fossil community. We integrated a time-calibrated molecular phylogeny of bivalve genera with a spatial dataset of late Cenozoic bivalves from the Pacific coast of North America to characterize how the community that was present in the semi-restricted San Joaquin Basin (SJB) embayment of present-day California was phylogenetically structured. We employed phylogenetic distance-based metrics across six time bins spanning 27-2.5 Ma and found no evidence of significant clustering or evenness in the SJB community when compared to communities randomly assembled from the regional source pool. Additionally, we found that new colonizers into the SJB were not significantly more or less closely related to native taxa than expected by chance. These findings suggest that neither competitive exclusion nor environmental filtering were overwhelmingly influential factors shaping the composition of the SJB community over time. We further discuss interpretations of these patterns in light of current understandings in community phylogenetics and reiterate the critical role historical perspectives play in how community assembly rules are assessed. https://creativecommons.org/publicdomain/zero/1.0/
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2020-06-09 <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span><b>OBJECTIVE: </b>To assess if different forms of regulation lead to differences in the quality of journal advertisements.</span></span></span></span></span></span></span></span></span></span></span></p> <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span><b>DESIGN: </b>Cross-sectional study.</span></span></span></span></span></span></span></span></span></span></span></p> <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span><b>PARTICIPANTS: </b>Thirty advertisements from family practice journals published from 2013-2015 were extracted for three countries with distinct regulatory pharmaceutical promotion systems: Australia, Canada, and the United States (US). </span></span></span></span></span></span></span></span></span></span></span></p> <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span><b>PRIMARY AND SECONDARY OUTCOME MEASURES: </b>Advertisements under each regulatory system were compared concerning three domains: information included in the advertisement, references to scientific evidence, and pictorial appeals and portrayals. An overall ranking for advertisement quality among countries was determined using the first two domains as the information assessed has been associated with more appropriate prescribing. </span></span></span></span></span></span></span></span></span></span></span></p> <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span><b>RESULTS: </b>Advertisements varied significantly for number of claims with quantitative benefit (Australia: 0.0 (0.0-3.0); Canada: 0.0 (0.0-5.0); US: 1.0 (0.0-6.0); p=0.01); statistical method used in reporting benefit (RRR, ARR, and NNT) (Australia: 6.7%, n=2; Canada: 10.0%, n=3; US: 36.6%, n=11; p=0.02); mention of adverse effects, warnings, or contraindications (Australia: 13.3%, n=4; Canada: 23.3%, n=7; US: 53.3%, n=16; p=0.002); equal prominence between safety and benefit information (Australia: 25.0%, n=1; Canada: 28.6%, n=2; US: 75.0%, n=12; p=0.04); and methodologic quality of references score (Australia: 0.4150 (0.25-0.70); Canada: 0.25 (0.00-0.63); US: 0.25 (0.00-0.75); p&lt;0.001). The US ranked first, Canada second, and Australia third for overall quality of journal advertisements. Significant differences for humor appeals (Australia: 3.3%, n=1; Canada: 13.3%, n=4; US: 26.7%, n=8; p=0.04), positive emotional appeals (Australia: 26.7%, n=8; Canada: 60.0%, n=18; US: 50.0%, n=15; p=0.03), social approval portrayals (Australia: 0.0%, n=0; Canada: 0.0%, n=0; US: 10.0%, n=3; p=0.04), and lifestyle or work portrayals (Australia: 43.3%, n=13; Canada: 50.0%, n=15; US: 76.7%, n=23; p=0.02) were found among countries.</span></span></span></span></span></span></span></span></span></span></span></p> <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span><b>CONCLUSIONS:</b> <a name="_Hlk34742358">Different regulatory systems influence journal advertisement quality concerning all measured domains. </a>However, differences may also be attributed to other regulatory, legal, cultural, or health system factors unique to each country.</span></span></span></span></span></span></span></span></span></span></span></p> https://creativecommons.org/publicdomain/zero/1.0/
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2023-01-13 <p>How do researchers choose their study species? Some choices are based on ecological or economic importance, some on ease of study, some on tradition – but could the name of a species influence researcher decisions? We asked whether phytophagous arthropod species named after their host plants were more likely to be assayed for host-associated genetic differentiation (or ‘HAD’; the evolution of cryptic, genetically isolated host specialists within an apparently more generalist lineage). We chose 30 arthropod species (from a Google Scholar search) for which a HAD hypothesis has been tested. We traced the etymologies of species names in the 30 corresponding genera, and asked whether HAD tests were more frequent among species whose etymologies were based on host-plant names (e.g., <em>Eurosta</em> <em>solidaginis</em>, which attacks <em>Solidago</em>) vs. those with other etymologies (e.g., <em>Eurosta</em> <em>fenestrata</em>, from Latin fenestra, or window). Species with host-derived etymologies were more likely to feature in studies of HAD than those with other etymologies. We speculate that the etymology of a scientific name can draw a researcher’s attention to aspects of life-history and thus influence the direction of our scientific gaze.</p> https://creativecommons.org/publicdomain/zero/1.0/
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2013-02-04 During speciation-with-gene-flow, effective migration varies across the genome as a function of several factors, including proximity of selected loci, recombination rate, strength of selection, and number of selected loci. Genome scans may provide better empirical understanding of the genome-wide patterns of genetic differentiation, especially if the variance due to the previously mentioned factors is partitioned. In North American lake whitefish (Coregonus clupeaformis), glacial lineages that diverged in allopatry about 60,000 years ago and came into contact 12,000 years ago have independently evolved in several lakes into two sympatric species pairs (a normal benthic and a dwarf limnetic). Variable degrees of reproductive isolation between species pairs across lakes offer a continuum of genetic and phenotypic divergence associated with adaptation to distinct ecological niches. To disentangle the complex array of genetically based barriers that locally reduce the effective migration rate between whitefish species pairs, we compared genome-wide patterns of divergence across five lakes distributed along this divergence continuum. Using restriction site associated DNA (RAD) sequencing, we combined genetic mapping and population genetics approaches to identify genomic regions resistant to introgression and derive empirical measures of the barrier strength as a function of recombination distance. We found that the size of the genomic islands of differentiation was influenced by the joint effects of linkage disequilibrium maintained by selection on many loci, the strength of ecological niche divergence, as well as demographic characteristics unique to each lake. Partial parallelism in divergent genomic regions likely reflected the combined effects of polygenic adaptation from standing variation and independent changes in the genetic architecture of postzygotic isolation. This study illustrates how integrating genetic mapping and population genomics of multiple sympatric species pairs provide a window on the speciation-with-gene-flow mechanism. https://creativecommons.org/publicdomain/zero/1.0/
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2022-01-06 <p>Using accurate measures of size and shape, we studied the eggs of 955 extant species across the avian phylogeny, including 39 of the 40 orders, and 78% of the 249 families. We show that the elongation component of egg shape is largely the result of constraints imposed by the female’s anatomy during egg formation, whereas asymmetry is mainly an adaptation to conditions during the incubation period. Thus, egg elongation is related to the size of the egg in relation to the size of the female’s oviduct and also to either the shape of her pelvis or general body conformation associated with her mode of locomotion. Egg asymmetry is related mainly to clutch size and the structure of the incubation site, factors that influence thermal efficiency during incubation and the risk of breakage. Importantly, general patterns across the phylogeny do not always reflect the trends within families and orders. We argue that the analysis of avian egg shape is most profitably conducted within taxa where all species share similar life histories and ecologies, as there is no single factor that influences egg shape in the same way in all birds.</p> https://creativecommons.org/publicdomain/zero/1.0/
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2021-07-14 <p>Animals may develop mutualistic associations with other species, whereby prey offer resources or services in exchange for protection from predators. Alternatively, prey may offer resources or services directly to their would-be predators in exchange for their lives. The latter may be the case of hemipterans that engage in mutualistic interactions with ants by offering a honeydew reward. We test the extent to which a honeydew offering vs. partner recognition may play a role as proximate mechanisms deterring ants from predating upon their hemipteran partners. We show that, when presented with a choice between a hemipteran partner and an alternative prey type, mutualist ants were less likely to attack and more likely to remain probing their hemipteran partners. This occurred even in the absence of an immediate sugary reward, suggesting either an evolved or learned partner recognition response. To a similar extent, however, ants were also less likely to attack the alternative prey type when laced with honey, even after the honey had been depleted, suggesting an ability of ants to recognize new potential sources of honey. Either possibility suggests a degree of innate or learned partner recognition.</p> https://creativecommons.org/publicdomain/zero/1.0/
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2022-11-02 <p><span style="font-size:12pt;line-height:32px;font-family:'Times New Roman' , serif;">Closely related species that use similar resources often differ in their seasonal patterns of activity, but the factors that limit their distributions across seasons are unknown for most species. One hypothesis to explain seasonal variation in the distributions of species involves a trade-off between competitive ability and cold tolerance, where tolerance to the cold compromises competitive ability in warmer (benign) temperatures, either at the level of the individual or population.</span></p> <p><span style="font-size:12pt;line-height:32px;font-family:'Times New Roman' , serif;">We tested both individual-level and population-level mechanisms of this hypothesis in two co-occurring species of temperate burying beetles (Silphidae: <em>Nicrophorus sayi</em>, <em>N. orbicollis</em>) that differ in their seasonal patterns of activity.</span></p> <p><span style="font-size:12pt;line-height:32px;font-family:'Times New Roman' , serif;">We measured cold tolerance, breeding activity as a function of temperature, and competitive ability as a function of temperature and season.</span></p> <p><span style="font-size:12pt;line-height:32px;font-family:'Times New Roman' , serif;">Consistent with our hypothesis, the mid-season <em>N. orbicollis</em> was less able to function at the cold temperatures that characterize early spring, when the early-season <em>N. sayi</em> is most active. The larger beetle, however, always won one-on-one competitive trials at warm temperatures, regardless of species, inconsistent with an individual-level trade-off. <em>N. orbicollis</em> was usually larger and successful when competing for the same carrion later in the season, mostly because of its larger population size, consistent with a trade-off between competitive ability and cold tolerance acting at the population level.</span></p> <p><span style="font-size:12pt;line-height:32px;font-family:'Times New Roman' , serif;">Our findings suggest that cold temperatures limit the mid-season <em>N. orbicollis</em> from earlier spring emergence, while competitive pressure from the more abundant, larger <em>N. orbicollis</em> constrains the early-season <em>N. sayi</em> from remaining active through the summer.</span></p> https://creativecommons.org/publicdomain/zero/1.0/
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2016-08-18 Post-copulatory processes, including sperm competition and cryptic female choice (CFC), can play important roles in the maintenance of polymorphisms. In Chinook salmon (Oncorhynchus tshawytscha), color morphs (red and white) exist due to genetic polymorphisms affecting carotenoid deposition in flesh, skin, and gametes. We investigated the role of post-spawning sexual selection in maintaining the polymorphism in a mixed population. First, we compared sperm velocity differences in water between morphs. Next, we measured color-based CFC via 2 methods: 1) sperm velocity in ovarian fluid and 2) in vitro competitive fertilization using paired red and white males. We found that red males had marginally faster sperm relative to white males in water, suggesting that carotenoid storage may affect sperm performance. However, ovarian fluid of red and white females influenced sperm velocity of red and white males differently, indicative of color-based CFC on sperm velocity. Furthermore, we found evidence of color-based CFC on paternity success during in vitro competitive fertilizations; however, sperm velocity in ovarian fluid did not predict results found under in vitro fertilization. Instead, in our study, sperm velocity in water was a significant predictor of fertilization success. When we accounted for this difference in sperm velocity (in water) between paired males, we partitioned the amount of variation in fertilization success that was attributed to individual level CFC (male pair × female) and male competitiveness (male pair) as 43% and 16%, respectively. In conclusion, post-spawning sexual selection processes represent important mechanisms contributing to the maintenance of the color polymorphism in nature. https://creativecommons.org/publicdomain/zero/1.0/
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2021-05-26 <p>Indirect effects resulting from species sharing the same enemy can shape spatio-temporal variations in species occurrence. The strength of such effects remains poorly known in natural communities composed of species from different trophic levels interacting in heterogeneous landscapes. Benefiting from a well-known arctic vertebrate community and marked spatio-temporal variations in the density of key prey species, we examined the effects of direct predator-prey and indirect predator-mediated effects on species occurrence in the landscape. We found both positive effects of one prey (lemmings), as well as negative indirect effects of another prey (colonial nesting snow geese) on the occurrence of species (ground-nesting birds) belonging to different guilds and trophic levels but sharing a common predator (arctic fox). However, species using prey refuges available in the landscape were not or less affected by predator-mediated effects. Similarly, the smallest (a passerine) and the largest and most dangerous species (an owl) for the shared predator were not affected by these effects. Our study provides one of the rare empirical evidence of predator-mediated effects ascending the food web (i.e., negative indirect effect of an herbivore on avian predators) and underlines how habitat structure and species traits can modulate the strength of indirect effects in natural communities.</p> https://creativecommons.org/publicdomain/zero/1.0/
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2019-10-31 Successful resource-management and conservation outcomes ideally depend on matching the spatial scales of population demography, local adaptation, and threat mitigation. For marine fish with high dispersal capabilities, this remains a fundamental challenge. Based on daily parentage assignments of more than 4000 offspring, we document fine-scaled temporal differences in individual reproductive success for two spatially adjacent (<10km) populations of a broadcast-spawning marine fish. Distinguished by differences in genetics and life history, Atlantic cod (Gadus morhua) from inner- and outer-fjord populations were allowed to compete for mating and reproductive opportunities. After accounting for phenotypic variability in several traits, reproductive success of outer-fjord cod was significantly lower than that of inner-fjord cod. This finding, given that genomically different cod ecotypes inhabit inner- and outer-fjord waters, raises the intriguing hypothesis that the populations might be diverging because of ecological speciation. Individual reproductive success, skewed within both sexes (more so among males), was positively affected by body size, which also influenced the timing of reproduction, larger individuals spawning later among females but earlier among males. Our work suggests that spatial mismatches between management and biological units exist in marine fishes and that studies of reproductive interactions between putative populations or ecotypes can provide an informative basis on which determination of the scale of local adaptation can be ascertained. https://creativecommons.org/publicdomain/zero/1.0/
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2022-08-07 <p>1. Spatially concentrated resources result in patch-based foraging, wherein the detection and choice of patches as well as the process of locating and exploiting resource patches involve moving through an explicit landscape composed of both resources and barriers to movement. An understanding of behavioural responses to resources and barriers is key to interpreting observed ecological patterns.</p> <p>2. We examined the process of resource discovery in the context of a heterogeneous seascape using sea urchins and drift kelp in urchin barrens as a model system. Under field conditions, we manipulated both the presence of a highly valuable resource (drift kelp) and a barrier to movement (sandy substratum) to test the interacting influence of these two factors on the process of resource discovery in barren grounds by urchins. We removed all foraging urchins (Strongylocentrotus droebachiensis) from replicate areas and monitored urchin recolonization and kelp consumption. We tested two hypotheses: 1) unstable substratum is a barrier to urchin movement and 2) the movement behaviour of sea urchins is modified by the presence of drift kelp.</p> <p>3. Very few urchins were found on sand, sand was a permeable barrier to urchin movement, and the permeability of this barrier varied between sites. In general, partial recolonization occurred strikingly rapidly, but sand slowed the consumption of drift kelp by limiting the number of urchins. Differences in the permeability of sand barriers between sites could be driven by differences in the size structure of urchin populations, indicating size-specific environmental effects on foraging behaviour.</p> <p>4. We demonstrate the influence of patchy seascapes in modulating grazing intensity in barren grounds through modifications of foraging behaviour. Behavioural processes modified by environmental barriers play an important role in determining grazing pressure, the existence of refuges for new algal recruits, and ultimately the dynamics of urchin-algal interactions in barren grounds.</p> https://creativecommons.org/publicdomain/zero/1.0/
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2022-11-22 <p>Hybrid zones reveal the strength of reproductive isolation between populations undergoing speciation and are a key tool in evolutionary biology research. Multiple replicate transects across the same hybrid zone offer insight into the dynamics of hybridization in different environments, clarifying the role of extrinsic forces on the speciation process. Red-breasted and red-naped sapsuckers (<em>Sphyrapicus</em> <em>ruber</em> and <em>S</em>. <em>nuchalis</em>) have a long zone of contact over approximately 1,600 km from central British Columbia, Canada to central California, USA. We used Genotyping-by-Sequencing data from three independent sapsucker hybrid zone transects to compare hybridization dynamics between these species under variable geoclimatic conditions. We generated geographic clines of the genomic data to compare hybrid zone widths and used Random Forest models and linear regression to assess the relationship between climate and sapsucker ancestry along each transect. Our results show variation in the directionality of backcrossing, often indicative of moving hybrid zones. We note variable cline widths among transects, indicating differences in selection maintaining hybrid zone dynamics. Furthermore, Random Forest models identified different variables in close association with sapsucker ancestry across each transect. These results indicate a lack of repeatability across replicate transects and a strong influence of local environment on hybrid zone dynamics.</p> https://creativecommons.org/publicdomain/zero/1.0/
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2015-11-23 Background: The class Chlorophyceae (Chlorophyta) includes morphologically and ecologically diverse green algae. Most of the documented species belong to the clade formed by the Chlamydomonadales (also called Volvocales) and Sphaeropleales. Although studies based on the nuclear 18S rRNA gene or a few combined genes have shed light on the diversity and phylogenetic structure of the Chlamydomonadales, the positions of many of the monophyletic groups identified remain uncertain. Here, we used a chloroplast phylogenomic approach to delineate the relationships among these lineages. Results: To generate the analyzed amino acid and nucleotide data sets, we sequenced the chloroplast DNAs (cpDNAs) of 24 chlorophycean taxa; these included representatives from 16 of the 21 primary clades previously recognized in the Chlamydomonadales, two taxa from a coccoid lineage (Jenufa) that was suspected to be sister to the Golenkiniaceae, and two sphaeroplealeans. Using Bayesian and/or maximum likelihood inference methods, we analyzed an amino acid data set that was assembled from 69 cpDNA-encoded proteins of 73 core chlorophyte (including 33 chlorophyceans), as well as two nucleotide data sets that were generated from the 69 genes coding for these proteins and 29 RNA-coding genes. The protein and gene phylogenies were congruent and robustly resolved the branching order of most of the investigated lineages. Within the Chlamydomonadales, 22 taxa formed an assemblage of five major clades/lineages. The earliest-diverging clade displayed Hafniomonas laevis and the Crucicarteria, and was followed by the Radicarteria and then by the Chloromonadinia. The latter lineage was sister to two superclades, one consisting of the Oogamochlamydinia and Reinhardtinia and the other of the Caudivolvoxa and Xenovolvoxa. To our surprise, the Jenufa species and the two spine-bearing green algae belonging to the Golenkinia and Treubaria genera were recovered in a highly supported monophyletic group that also included three taxa representing distinct families of the Sphaeropleales (Bracteacoccaceae, Mychonastaceae, and Scenedesmaceae). Conclusions: Our phylogenomic study advances our knowledge regarding the circumscription and internal structure of the Chlamydomonadales, suggesting that a previously unrecognized lineage is sister to the Sphaeropleales. In addition, it offers new insights into the flagellar structures of the founding members of both the Chlamydomonadales and Sphaeropleales. https://creativecommons.org/publicdomain/zero/1.0/
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2014-12-09 Insects approved for classical biocontrol of weeds are often capable of using close relatives of their target weed for feeding, oviposition, or larval development, with reduced preference and performance. When nontarget herbivory occurs and is suspected to reduce survival, growth, or fecundity of individual plants, and insects are capable of reproducing on their nontarget host, characterization of spatial and temporal patterns of the occurrence and intensity of herbivory is valuable for predicting potential population-level effects. Here, we perform a novel post-release manipulative field experiment with a root-feeding biocontrol weevil, Mogulones crucifer, released in Canada to control the rangeland weed Cynoglossum officinale, to test for its ability to establish on the nontarget plant Hackelia micrantha. After Cynoglossum, M. crucifer exhibits its highest preference for and performance on Hackelia spp. We released M. crucifer on Canadian rangeland sites with naturally occurring populations of H. micrantha growing interspersed with the target weed or in the near absence of the target weed. Adult weevil feeding on surrounding plants was monitored for three summers after release (years 0, 1, and 2), and, subsequently, subsets of plants were destructively sampled to determine M. crucifer oviposition levels. Additional oviposition and larval development data were obtained from seven non-experimental sites where weevils were released zero, three, or four years earlier. M. crucifer was not detected on experimental sites without C. officinale after two years, and nontarget herbivory was restricted to rare, low-level spillover. Visible evidence of adult herbivory (i.e., scars on shoots) was associated with oviposition in 90% of targets but only 30% of nontarget plants. We infer, through ecological refuge theory, that nontarget population-level impacts from M. crucifer spillover are unlikely because of temporal, spatial, and probabilistic refuges from herbivory, and make recommendations for monitoring and management of biocontrol systems with similar attributes, such as removing target plants around nontarget populations of interest. Because M. crucifer is among the least host-specific of the modern weed biocontrol agents, and H. micrantha is likely one of its most highly preferred nontargets, these conclusions are, arguably, generally applicable to other nontarget plants and biocontrol systems. https://creativecommons.org/publicdomain/zero/1.0/
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2013-04-19 Major histocompatibility (MHC) immune system genes may evolve in response to pathogens in the environment. Because they also may affect mate choice, they are candidates for having great importance in ecological speciation. Here, we use next-generation sequencing to test the general hypothesis of parallelism in patterns of MHCIIβ diversity and bacterial infections among five dwarf and normal whitefish sympatric pairs. A second objective was to assess the functional relationships between specific MHCIIβ alleles and pathogens in natural conditions. Each individual had between one and four alleles, indicating two paralogous loci. In Cliff Lake, the dwarf ecotype was monomorphic for the most common allele. In Webster Lake, the skew in the allelic distribution was towards the same allele but in the normal ecotype, underscoring the nonparallel divergence among lakes. Our signal of balancing selection matched putative peptide binding region residues in some cases, but not in others, supporting other recent findings of substantial functional differences in fish MHCIIβ compared with mammals. Individuals with fewer alleles were less likely to be infected; thus, we found no evidence for the heterozygote advantage hypothesis. MHCIIβ alleles and pathogenic bacteria formed distinct clusters in multivariate analyses, and clusters of certain alleles were associated with clusters of pathogens, or sometimes the absence of pathogens, indicating functional relationships at the individual level. Given that patterns of MHCIIβ and bacteria were nonparallel among dwarf and normal whitefish pairs, we conclude that pathogens driving MHCIIβ evolution did not play a direct role in their parallel phenotypic evolution. https://creativecommons.org/publicdomain/zero/1.0/
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2016-02-02 The development of brain function in young infants is poorly understood. The core challenge is that infants have a limited behavioral repertoire through which brain function can be expressed. Neuroimaging with fMRI has great potential as a way of characterizing typical development, and detecting abnormal development early. But, a number of methodological challenges must first be tackled to improve the robustness and sensitivity of neonatal fMRI. A critical one of these, addressed here, is that the hemodynamic response function (HRF) in pre-term and term neonates differs from that in adults, which has a number of implications for fMRI. We created a realistic model of noise in fMRI data, using resting-state fMRI data from infants and adults, and then conducted simulations to assess the effect of HRF of the power of different stimulation protocols and analysis assumptions (HRF modeling). We found that neonatal fMRI is most powerful if block-durations are kept at the lower range of those typically used in adults (full on/off cycle duration 25-30s). Furthermore, we show that it is important to use the age-appropriate HRF during analysis, as mismatches can lead to reduced power or even inverted signal. Where the appropriate HRF is not known (for example due to potential developmental delay), a flexible basis set performs well, and allows accurate post-hoc estimation of the HRF. https://creativecommons.org/publicdomain/zero/1.0/
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2016-08-15 Woodpeckers are considered ecosystem engineers because they excavate tree cavities which are used subsequently by many species of secondary cavity nesters for breeding. Woodpeckers have the choice of excavating a new hole or reusing an existing one, and this propensity to excavate (e) may affect community dynamics but has rarely been investigated. Using 18 years of data on a population of northern flickers Colaptes auratus, I tested six hypotheses to explain the propensity to excavate (e) in a landscape which experienced two types of disturbance: pine beetles and wildfires. Woodpecker age, breeding experience and mate retention had little influence on e which varied between 13-39% annually and averaged 23% for 1843 first nests over the 18 years. Body size and body condition of males and females were not associated with e but rates of excavation declined seasonally, suggesting time rather than energy costs limited excavation effort. Reduced cavity availability mediated through high conspecific density coupled with wildfires triggered relatively high excavation rates, up to 39% but e decreased to baseline levels three years after the landscape disturbances. Nearly 2/3 of males did not excavate in their lifetime but apparently, e is great enough to balance the average rate of cavity tree loss in this forest which is 11% annually. Excavation propensity in flickers is flexible, but the birds reduce their work levels if there is a surplus of holes available. https://creativecommons.org/publicdomain/zero/1.0/
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2016-04-13 Natural enemies such as predators and parasites are known to shape intra-specific variability of behaviour and personality in natural populations, yet several key questions remain: (1) What is the relative importance of predation versus parasitism in shaping intra-specific variation of behaviour across generations? (2) What are the contributions of genetic and plastic effects to this behavioural divergence? And (3) to what extent are responses to predation and parasitism repeatable across independent evolutionary lineages? We addressed these questions using Trinidadian guppies (Poecilia reticulata) (1) varying in their exposure to dangerous fish predators and Gyrodactylus ectoparasites, for (2) both wild-caught F0 and laboratory-reared F2 individuals and coming from (3) multiple independent evolutionary lineages (i.e. independent drainages). Several key findings emerged. First, a population's history of predation and parasitism influenced behavioural profiles, but to different extent depending on the behaviour considered (activity, shoaling or boldness). Second, we had evidence for some genetic effects of predation regime on behaviour, with differences in activity of F2 laboratory-reared individuals, but not for parasitism, which had only plastic effects on the boldness of wild-caught F0 individuals. Third, the two lineages showed a mixture of parallel and non-parallel responses to predation/parasitism, with parallel responses being stronger for predation than for parasitism and for activity and boldness than for shoaling. These findings suggest that different sets of behaviours provide different pay-offs in alternative predation/parasitism environments, and that parasitism have more transient effects in shaping intra-specific variation of behaviour than does predation. https://creativecommons.org/publicdomain/zero/1.0/
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2016-01-25 Abnormal embryo cortisol level causes developmental defects and poor survival in zebrafish (Danio rerio). However, no study has demonstrated that maternal stress leads to higher embryo cortisol content in zebrafish. We tested the hypothesis that maternal stress-associated elevation in cortisol levels increases embryo cortisol content in this asynchronous breeder. Zebrafish mothers were fed cortisol-spiked food for 5 days, to mimic maternal stress, followed by daily breeding for 10 days to monitor temporal embryo cortisol content. Cortisol treatment increased mean embryo yield, but the daily fecundity was variable among the groups. Embryo cortisol content was variable in both groups over a 10-day period. A transient elevation in cortisol levels was observed in the embryos from cortisol-fed mothers only on day 3, but not on subsequent days. We tested whether excess cortisol stimulates 11βHSD2 expression in ovarian follicles as a means to regulate embryo cortisol deposition. Cortisol treatment in vitro increased 11β HSD2 levels sevenfold, and this expression was regulated by actinomycin D and cycloheximide suggesting tight regulation of cortisol levels in the ovarian follicles. We hypothesize that cortisol-induced upregulation of 11βHSD2 activity in the ovarian follicles is a mechanism restricting excess cortisol incorporation into the eggs during maternal stress. https://creativecommons.org/publicdomain/zero/1.0/
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2020-06-01 <p style="text-align:justify;margin-bottom:13px;">Memory reconsolidation is a fundamental plasticity process in the brain that allows established memories to be changed or erased. However, certain boundary conditions limit the parameters under which memories can be made plastic.  Strong memories do not destabilize, for instance, although why they are resilient is mostly unknown. Here, we extend the understanding of the mechanisms implicated in reconsolidation-resistant memories by<i> </i>investigating the hypothesis that specific modulatory signals shape memory formation into a state that lacks lability. We find that the activation of the noradrenaline-locus coeruleus system (NOR-LC) during strong fear memory encoding increases molecular mechanisms of stability at the expense of lability in the amygdala. Preventing the NOR-LC from modulating strong fear encoding results in the formation of memories that can undergo reconsolidation within the amygdala and thus are vulnerable to post-reactivation interference. Thus, the memory strength boundary condition on reconsolidation is set at the time of encoding by the action of the NOR-LC.</p> https://creativecommons.org/publicdomain/zero/1.0/