Recherche

Figshare Translation missing: fr.blacklight.search.logo
Additional file 3 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)
figshare
Carrier, Alexandra; Prunier, Julien; Poisson, William; Trottier-Lavoie, Mallorie; Gilbert, Isabelle; Cavedon, Maria; Pokharel, Kisun; Kantanen, Juha; Musiani, Marco; Côté, Steeve D.; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Robert, Claude — 2022 Additional file 3: List of IDs of faulty probes that may yet be found in the resulting vcf https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 1 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)
figshare
Carrier, Alexandra; Prunier, Julien; Poisson, William; Trottier-Lavoie, Mallorie; Gilbert, Isabelle; Cavedon, Maria; Pokharel, Kisun; Kantanen, Juha; Musiani, Marco; Côté, Steeve D.; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Robert, Claude — 2022 Additional file 1: Details for each step of the stacks workflow https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 2 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)
figshare
Carrier, Alexandra; Prunier, Julien; Poisson, William; Trottier-Lavoie, Mallorie; Gilbert, Isabelle; Cavedon, Maria; Pokharel, Kisun; Kantanen, Juha; Musiani, Marco; Côté, Steeve D.; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Robert, Claude — 2022 Additional file 2: List of SNPs positioned on the X chromosome https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 1 of Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights
figshare
Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude — 2023 Additional file 1. Information on 79-mers used for chromosome-level assembly. These Excel files list each oligo with its unique ID and associated probe on a scaffold. The 39-mers genome homologous sequences obtained from running OligoMiner and IFPD scripts are also given with their start and end positions on the scaffold sequence. R_id and F_id are based on 20-mers ID attribution (Additional file 2). The reverse and forward specific 20-mers sequences were assigned according to scaffold number and colour pattern respectively. Each 20-mers forward sequence bears a unique fluorophore (Fluorophore column). Assembled 79-mers oligo sequences were purchased from Genscript. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 2 of Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights
figshare
Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude — 2023 Additional file 2. Orthogonal 20-mers sequences and attribution. Excel file listing the 29 orthogonal 20-mers sequences by ID and used as a reverse or forward primer or a detection oligo. Reverse sequences were used on up to four scaffolds but were unique to a single scaffold in each library. Forward sequences and adapters were used for all libraries. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 3 of Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights
figshare
Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude — 2023 Additional file 3. Primers and detection oligo. Excel file listing the primers used for amplification and transcription reactions and as detection oligo. Reverse primers consist of the 20-mers complementary sequence linked to the 3’ end of the T7 sequence 5’-CGATTGAGGCCGGTAATACGACTCACTATAGGG-3’ [45]. Forward primer 20-mers are linked to the 3’ end of the adapter sequence. The resulting 53-mers reverse primer and 40-mers forward primer oligo were used for PCR. Forward primers were used also for RT-PCR. The fluorophore-linked homolog of the specific 20-mers adapter was the detector of probe binding. These 30 oligo were purchased from IDT as custom standard or HPLC-purified DNA. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 4 of Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights
figshare
Poisson, William; Prunier, Julien; Carrier, Alexandra; Gilbert, Isabelle; Mastromonaco, Gabriela; Albert, Vicky; Taillon, Joëlle; Bourret, Vincent; Droit, Arnaud; Côté, Steeve D.; Robert, Claude — 2023 Additional file 4. Scaffold probe fluorophore associations. Excel file listing the fluorophores used for each scaffold, based on scaffold colour scheme. To create additional colours, some probes were paired with two fluorophores to obtain a mixture. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 1 of Cytogenetic screening of a Canadian swine breeding nucleus using a newly developed karyotyping method named oligo-banding
figshare
Poisson, William; Bastien, Alexandre; Gilbert, Isabelle; Carrier, Alexandra; Prunier, Julien; Robert, Claude — 2023 Additional file 1: Table S1. Oligonucleotide information. This Excel file contains four spreadsheets containing oligonucleotide libraries 1 to 4 and one giving the conversion between colour ID and the attributed fluorophore. Each library contains a description of the chromosome, probe and colour attributions for each oligo used in this study. The genome-homologous 39mer are also listed with their respective genomic positions. The “Seq_fin” column contains the final 79mer oligo sequences ordered from Genscript. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 2 of Cytogenetic screening of a Canadian swine breeding nucleus using a newly developed karyotyping method named oligo-banding
figshare
Poisson, William; Bastien, Alexandre; Gilbert, Isabelle; Carrier, Alexandra; Prunier, Julien; Robert, Claude — 2023 Additional file 2: Table S2. Primers and detection oligo sequences. This Excel file contains each primer sequence linked to the 3’ end of their attributed specific fluorophore “handle”, the chromosome-specific reverse primers containing the T7 sequence at the 5’ end, and each detection oligo sequence with its attributed fluorophore at the 3’ end. All sequences were purchased from IDT DNA as standard purified oligos except for the detection oligos, which were purchased as HPLC-purified oligos. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 6 of Cytogenetic screening of a Canadian swine breeding nucleus using a newly developed karyotyping method named oligo-banding
figshare
Poisson, William; Bastien, Alexandre; Gilbert, Isabelle; Carrier, Alexandra; Prunier, Julien; Robert, Claude — 2023 Additional file 6: Table S3. Correspondence between oligo-banding probes and G-bands and their positions on pig chromosomes. Oligo-banding probe positions are specified starting at the first nucleotide of the first oligonucleotide and ending at the last nucleotide of the last oligonucleotide. G-band positions were estimated by Donaldson et al. [1]. The centromere position relative to oligo-banding probes was confirmed on each chromosome pair. Discrepancy with Donaldson et al. [1] was observed on SSC6, SSC7 and Y. However, our centromere positions match those of Warr et al. [44]. When available, the regions closest to our positioning were included in the Predicted centromere region (start–end)** columns based on Warr et al. [44] results. A discrepancy was observed also for the SSC17 centromere position as Warr et al. [44] have detected it at the SSC17 end compared to our results. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 7 of Cytogenetic screening of a Canadian swine breeding nucleus using a newly developed karyotyping method named oligo-banding
figshare
Poisson, William; Bastien, Alexandre; Gilbert, Isabelle; Carrier, Alexandra; Prunier, Julien; Robert, Claude — 2023 Additional file 7: Table S4. Estimated cost of the oligo-banding method. Economic estimation of the main steps associated with the oligo-banding method which are Oligo pool cost, PCR step, in vitro transcription (IVT) step, reverse transcription (RT) step and hybridization total cost including all steps (Total). Costs are expressed in Canadian dollars (CAD) and for the hybridization of one sample (slide). Consumable material costs for each step are included but salaries and laboratory and microscopy basics are not included as they may change between laboratories. https://creativecommons.org/licenses/by/4.0/legalcode
Figshare Translation missing: fr.blacklight.search.logo
Additional file 4 of Integrative analysis of green ash phloem transcripts and proteins during an emerald ash borer infestation
figshare
Chiu, Christine C.; Pelletier, Gervais; Stival Sena, Juliana; Roux-Dalvai, Florence; Prunier, Julien; Droit, Arnaud; Séguin, Armand — 2024 Additional file 4: Table S2. The putative functions of differentially expressed transcripts found in high-low comparisons. Table S3. The putative functions of differentially expressed transcripts found in high-medium comparisons. Table S4. The putative functions of differentially expressed transcripts found in medium-low comparisons. Table S5. The putative functions of differentially expressed proteins found in high-low comparisons. Table S6. Differentially expressed transcripts found in the high-low comparison that were also differentially expressed in EAB treatment vs control (TvC) experiment from Lane et al. 2016 [19]. Table S7. Differentially expressed transcripts found in the high-medium comparison that were also differentially expressed in EAB treatment vs control (TvC) experiment from Lane et al. 2016 [19]. Table S8. Differentially expressed transcripts found in the medium-low comparison that were also differentially expressed in EAB treatment vs control (TvC) experiment from Lane et al. 2016 [19]. Table S9. Differentially expressed proteins found in the high-low comparison that were also differentially expressed in EAB treatment vs control (TvC) experiment from Lane et al. 2016 [19]. Table S10. Differentially expressed proteins/transcripts found in the integrative analysis that were also differentially expressed in EAB treatment vs control (TvC) experiment from Lane et al. 2016 [19]. Table S11. Differentially expressed transcripts found in the high-low and high-medium comparison that were also identified as EAB resistance genes by Kelly at al. 2020. https://creativecommons.org/licenses/by/4.0/legalcode

Instructions pour la recherche cartographique

1.Activez le filtre cartographique en cliquant sur le bouton « Limiter à la zone sur la carte ».
2.Déplacez la carte pour afficher la zone qui vous intéresse. Maintenez la touche Maj enfoncée et cliquez pour encadrer une zone spécifique à agrandir sur la carte. Les résultats de la recherche changeront à mesure que vous déplacerez la carte.
3.Pour voir les détails d’un emplacement, vous pouvez cliquer soit sur un élément dans les résultats de recherche, soit sur l’épingle d’un emplacement sur la carte et sur le lien associé au titre.
Remarque : Les groupes servent à donner un aperçu visuel de l’emplacement des données. Puisqu’un maximum de 50 emplacements peut s’afficher sur la carte, il est possible que vous n’obteniez pas un portrait exact du nombre total de résultats de recherche.

(auteur : Prunier, Julien)

Limiter par :

Effacer tout

au