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Renaud, Limoilou-Amelie; Blanchet, F. Guillaume; Cohen, Alan A.; Pelletier, Fanie 2019-03-22 1.Ecologists seek to understand the fitness consequences of variation in physiological markers, under the hypothesis that physiological state is linked to variability in individual condition and life history. 2.Thus, ecologists are often interested in estimating correlations between entire suites of correlated traits, or biomarkers, but sample size limitations often do not allow us to do this properly when large numbers of traits or biomarkers are considered. 3.Latent variables are a powerful tool to overcome this complexity. Recent statistical advances have enabled a new class of multivariate models – Multivariate Hierarchical Modeling (MHM) with latent variables − which allow to statistically estimate unstructured covariances/correlations among traits with reduced constraints on the number of degrees of freedom to account in the model. It is thus possible to highlight correlated structures in potentially very large numbers of traits. 4.Here, we apply MHM to evaluate the relative importance of individual differences and environmental effects on milk composition and identify the drivers of this variation. We ask whether variation in bighorn sheep milk affects offspring fitness. 5.We evaluate whether mothers show repeatable individual differences in the concentrations of 11 markers of milk composition and we investigate the relative importance of annual variability, maternal identity and morphological traits in structuring milk composition. We then use variance estimates to investigate how a subset of repeatable milk markers influence lamb summer survival. 6.Repeatability of milk markers ranged from 0.05 to 0.64 after accounting for year‐to‐year variations. Milk composition was weakly but significantly associated with maternal mass in June and September, summer mass gain and winter mass loss. Variation explained by year‐to year fluctuations ranged from 0.07 to 0.91 suggesting a strong influence of environmental variability on milk composition. Milk composition did not affect lamb survival to weaning. 7.Using joint models in ecological, physiological or behavioural contexts has the major advantage of decomposing a (co)variance/correlation matrix while being estimated with fewer parameters than in a ‘traditional’ mixed‐effects model. The joint models presented here complement a growing list of tools to analyse correlations at different hierarchical levels separately and may thus represent a partial solution to the conundrum of physiological complexity.
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Renaud, Limoilou-Amelie 2023-08-31 <p class="MsoBodyText"><span lang="EN-CA">Beluga (<em>Delphinapterus leucas</em>) from the St. Lawrence Estuary, Canada, have been declining since the early 2000s, suggesting recruitment issues as a result of low fecundity, abnormal abortion rates or poor calf or juvenile survival. Pregnancy is difficult to observe in cetaceans, making the ground-truthing of pregnancy estimates in wild individuals challenging. Blubber progesterone concentrations were contrasted among 62 SLE beluga with a known reproductive state (i.e., pregnant, resting, parturient, and lactating females), that were found dead in 1997–2019. The suitability of a threshold obtained from decaying carcasses to assess reproductive state and pregnancy rate of freshly-dead or free-ranging and blindly-sampled beluga was examined using three statistical approaches and two datasets (135 freshly-harvested carcasses in Nunavik, and 65 biopsy-sampled SLE beluga). Progesterone concentrations in decaying carcasses were considerably higher in known-pregnant (mean </span><span lang="EN-CA">±</span><span lang="EN-CA"> sd: </span><span lang="EN-CA">365 </span><span lang="EN-CA">±</span><span lang="EN-CA"> 244 ng g<sup>-1</sup> of tissue) </span><span lang="EN-CA">than resting (</span><span lang="EN-CA">3.1 </span><span lang="EN-CA">±</span><span lang="EN-CA"> 4.5 ng g<sup>-1</sup> of tissue</span><span lang="EN-CA">) or lactating (</span><span lang="EN-CA">38.4 </span><span lang="EN-CA">±</span><span lang="EN-CA"> 100 ng g<sup>-1</sup> of tissue</span><span lang="EN-CA">) females. An approach based on statistical mixtures of distributions and a logistic regression was compared to the commonly-used, fixed threshold approach (here, 100 ng g<sup>-1</sup>) for discriminating pregnant from non-pregnant females. The error rate for classifying individuals of known reproductive status was the lowest for the fixed threshold and logistic regression approaches, but the mixture approach required limited <em>a priori</em> knowledge for clustering individuals of unknown pregnancy status. Mismatches in assignations occurred at lipid content &lt;10% of sample weight. Our results emphasize the importance of reporting lipid contents and progesterone concentrations in both units (ng g<sup>-1 </sup>of tissue and ng g<sup>-1</sup> of lipid) when sample mass is low. By highlighting ways to circumvent potential biases in field sampling associated with capturability of different segments of a population, this study also enhances the usefulness of the technique for estimating pregnancy rate of free-ranging population. </span></p>
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Renaud, Limoilou-Amelie; Pigeon, Gabriel; Van de Walle, Joanie; Bordeleau, Xavier; Hammill, Mike O.; Pelletier, Fanie 2023-06-02 <p class="MsoNormal"><span lang="EN-CA">Marine mammal populations worldwide greatly benefitted from conservation measures put in place since the 1970s following overexploitation, and many pinniped populations have recovered. However, threats due to bycatch, interspecific interactions or climate change remain, and detailed knowledge on vital rates, population dynamics and their responses to environmental changes is essential for efficient management and conservation of wild populations. In this study, we quantified pup abundance and survival of individually marked harbour seal (<em>Phoca vitulina</em> Linnaeus, 1758) pups during the preweaning period at Bic Island and Métis sites in the St. Lawrence Estuary from 1998 – 2019. We used mark-recapture models to evaluate competing hypotheses regarding variation in daily preweaning survival rates and capture probability during the pups’ first 30 days of life. Pup abundance increased from 76 (95% CI: [59, 101]) to 323 [95% CI: 233, 338] in the past two decades at Bic Island and from 66 [95% CI:47, 91] to 285 [95% CI: 204, 218] at Métis. Preweaning survival was generally higher at Bic (0.73 [95% CI: 0.58,0.82]) than at Métis (0.68 [95% CI: 0.52,0.79]). We hypothesize that differences between habitats and human disturbance contribute to lower preweaning survival at Métis, but behavioural studies are needed to understand the impacts of disturbance on mother-pup interactions during the nursing period. </span></p>
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Renaud, Limoilou-Amelie; Festa-Bianchet, Marco; Pelletier, Fanie 2021-10-21 <p style="text-align:start;text-indent:0px;"><span><span style="font-style:normal;"><span><span style="font-weight:normal;"><span style="letter-spacing:normal;"><span><span><span style="white-space:normal;"><span><span><span>In species with long gestation, females commit to reproduction several months before parturition. If cues driving conception date are uncoupled from spring conditions, parturition could be mistimed. Mismatch may increase with global change if the rate of temporal changes in autumn cues differs from the rate of change in spring conditions. Using 17 years of data on climate and vegetation phenology, we show that autumn temperature and precipitation, but not vegetation phenology, explain parturition date in bighorn sheep. Although autumn cues drive the timing of conception, they do not predict conditions at parturition in spring. We calculated the mismatch between individual parturition date and spring green-up, assessed whether mismatch increased over time and investigated the consequences of mismatch on lamb neonatal survival, weaning mass and overwinter survival. Mismatch fluctuated over time but showed no temporal trend. Temporal changes in green-up date did not lead to major fitness consequence of mismatch. Detailed data on individually marked animals revealed no effect of mismatch on neonatal or overwinter survival, but lamb weaning mass was negatively affected by mismatch. Capital breeders might be less sensitive to mismatch than income breeders because they are less dependent on daily food acquisition. Herbivores in seasonal environments may access sufficient forage to sustain lactation before or after the spring ‘peak’ green-up, and partly mitigate the consequences of a mismatch. Thus, the effect of phenological mismatch on fitness may be affected by species life-history, highlighting the complexity in quantifying trophic mismatches in the context of climate change. </span></span></span></span></span></span></span></span></span></span></span></p>

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