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Dryad Translation missing: fr.blacklight.search.logo
Dryad
Taylor, Andrew Douglas; Ohashi, Kyoko; Sheng, Jinyu; Litvak, Matthew Kenneth 2017-03-22 Seasonal distribution of adult Atlantic sturgeon was examined using pop-up satellite archival tags (PSATs) and ultrasonic transmitters deployed in the Saint John River, New Brunswick, Canada. Seven MK10 PSATs programmed for release in June 2012 and seven MiniPAT PSATs programmed for release in February and April 2013 were deployed in August 2011 and 2012, respectively. Eleven of 14 PSATs surfaced and transmitted depth and temperature data archived for the duration of their deployment (121–302 days). Among these eleven PSATs, five were recovered and 15-sec archival data was downloaded. Following exit from the Saint John River in the fall, tagged fish occupied a mean monthly depth of 76.3–81.6 m at temperatures as low as 4.9˚C throughout the winter before returning to shallower areas in the spring. The majority of ultrasonic detections occurred in the Bay of Fundy, but fish were detected as far as Riviere Saint-Jean, Quebec, approximately 1500 km from the Bay of Fundy (representing long-distance migratory rates of up to 44 km/day). All PSATs were first detected in the Bay of Fundy. Tags that released in February and April were found 5–21 km offshore of the Saint John Harbour, while tags that released in June were first detected in near shore areas throughout the Bay of Fundy. The substrate at winter tag release locations (estimated from backward numerical particle-tracking experiments) consisted primarily of moraines and postglacial mud substrate with low backscatter strength, indicative of soft or smooth seabed. Based on the proximity of winter tag release locations, the consistent depths observed between fish, and previous research, it is suspected that a winter aggregation exists in the Bay of Fundy. This study expands the understanding of the marine distribution and range of Atlantic sturgeon on the east coast of Canada.
Zenodo Translation missing: fr.blacklight.search.logo
Zenodo
Ohashi, Kyoko; Laurent, Arnaud; Renkl, Christoph; Sheng, Jinyu; Fennel, Katja; Oliver, Eric 2024-07-16 DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes daily-mean output of all (ocean circulation, sea ice, and biogeochemistry) modules for September 2015. Similar files for September 2013 are available at https://doi.org/10.5281/zenodo.12744506. Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at https://doi.org/10.5281/zenodo.12752091. CPP header and runtime parameter files for the biogeochemistry module are available upon request. Sample input files for physics-only simulations are available at https://doi.org/10.5281/zenodo.12752190, https://doi.org/10.5281/zenodo.12734049, and https://doi.org/10.5281/zenodo.12735153. Input files for the biogeochemistry module are available upon request. https://creativecommons.org/licenses/by/4.0/legalcode
Zenodo Translation missing: fr.blacklight.search.logo
Zenodo
Ohashi, Kyoko; Laurent, Arnaud; Renkl, Christoph; Sheng, Jinyu; Fennel, Katja; Oliver, Eric 2024-07-16 DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes most of the input files necessary for a physics-only simulation from 1 September to 31 December 2013. The remaining input files for this period, which should be placed in the directory sponge/ within the directory tree contained in this record, are available at https://doi.org/10.5281/zenodo.12734049 and https://doi.org/10.5281/zenodo.12735153. Input files for the biogeochemistry module are available upon request. Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at https://doi.org/10.5281/zenodo.12752091. CPP header and runtime parameter files for the biogeochemistry module are available upon request. Sample output files (from the physics and biogeochemistry modules) are available at https://doi.org/10.5281/zenodo.12744506 and https://doi.org/10.5281/zenodo.12746262. https://creativecommons.org/licenses/by/4.0/legalcode
Zenodo Translation missing: fr.blacklight.search.logo
Zenodo
Ohashi, Kyoko; Laurent, Arnaud; Renkl, Christoph; Sheng, Jinyu; Fennel, Katja; Oliver, Eric 2024-07-16 DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes daily-mean output of all (ocean circulation, sea ice, and biogeochemistry) modules for September 2013, when the simulation was initialized. Similar files for January 2015 are available at https://doi.org/10.5281/zenodo.12746262. Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at https://doi.org/10.5281/zenodo.12752091. CPP header and runtime parameter files for the biogeochemistry module are available upon request. Sample input files for physics-only simulations are available at https://doi.org/10.5281/zenodo.12752190, https://doi.org/10.5281/zenodo.12734049, and https://doi.org/10.5281/zenodo.12735153. Input files for the biogeochemistry module are available upon request. https://creativecommons.org/licenses/by/4.0/legalcode
Zenodo Translation missing: fr.blacklight.search.logo
Zenodo
Ohashi, Kyoko; Laurent, Arnaud; Renkl, Christoph; Sheng, Jinyu; Fennel, Katja; Oliver, Eric 2024-07-16 DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes the files necessary for nudging the simulated temperature and salinity towards Copernicus GLORYS12V1 reanalysis values in a simulation from 1 September to 31 December 2013. The remaining input files for this period are available at https://doi.org/10.5281/zenodo.12752190 and https://doi.org/10.5281/zenodo.12735153. Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for phyiscs-only simulations are available at https://doi.org/10.5281/zenodo.12752091. CPP header and runtime parameter files for the biogeochemistry module are available upon request. Sample output files (from the physics and biogeochemistry modules) are available at https://doi.org/10.5281/zenodo.12744506 and https://doi.org/10.5281/zenodo.12746262. https://creativecommons.org/licenses/by/4.0/legalcode
Zenodo Translation missing: fr.blacklight.search.logo
Zenodo
Ohashi, Kyoko; Sheng, Jinyu; Hatcher, Bruce G. 2024-12-23 This repository contains files related to the manuscript "A case study in the use of ocean circulation and particle-tracking models to quantify connectivity among Marine Protected Areas in Canadian Atlantic waters" sumbitted to Frontiers in Marine Science. 1. ROMSPATH: Files related to the numerical particle-tracking model ROMSPath (Hunter et al., 2022). The version here has been modified to allow the use of time-invariant circulation (hydrodynamic) fields. The line `#CPPFLAGS =-DUPDATE_HYDRO` be in makefile should be uncommented if time-varying circulation fields are to be used. Please see the developers' documentation (README.md and ROMSPATH_MANUAL.docx) for more details. 2. ROMS_OUTPUT: Output files of the numerical ocean-circulation model ROMS from a simulation in which it was coupled to the sea ice model CICE. The simulation was initialized 1 September 2013. Here the daily-mean model output has been averaged into seasonal means. The file names are of the format roms_avg_[yyyymmdd]_[yyyymmdd].nc where the two dates are the starting and ending dates of the averaging period. These files were inputs for  particle-tracking experiments using ROMSPath. 3. ROMSPATH_OUTPUT: Output files of numerical particle-tracking experiments using ROMSPath. The subdirectories BDA and SAB contain, respectively, files for experiments in which particles were released from the Banc-des-Americains and Saint Anns Bank Marine Protected Areas. Each of these subdirectories contain 16 subdirectories (4 seasons for each of the years 2015-2018). Each of the 16 subdirectories contain:    1. ROMSPath.data: Namelist (runtime parameter) file    2. ROMSPath.exe: Executable file    3. ROMSPath_out_ ... [yyyymmdd]_[yyyymmdd].nc: Output file    4. init_part_ ... .csv: Initial particle position file    5. romspath_ ... .err & .log: Error message & log files    6. submit_romspath.sh: Script to submit job to an HPC cluster. Reference: Hunter, E. J., Fuchs, H. L., Wilkin, J. L., Gerbi, G. P., Chant, R. J., & Garwood, J. C. (2022). ROMSPath v1.0: Offline particle tracking for the Regional Ocean Modeling System (ROMS). Geoscientific Model Development, 15(11), 4297-4311. https://doi.org/10.5194/gmd-15-4297-2022 https://creativecommons.org/licenses/by/4.0/legalcode
Zenodo Translation missing: fr.blacklight.search.logo
Zenodo
Ohashi, Kyoko; Laurent, Arnaud; Renkl, Christoph; Sheng, Jinyu; Fennel, Katja; Oliver, Eric 2024-07-16 DALROMS-NWA12 v1.0 is a coupled circulation-sea ice-biogeochemistry modelling system based on ROMS, CICE, and MCT. The model domain covers the North Atlantic Ocean from ~81 deg W to ~39 deg W and ~33.5 deg N to 76 deg N. This record includes the files necessary for nudging the currents towards Copernicus GLORYS12V1 reanalysis values in a simulation from 1 September to 31 December 2013. The remaining input files for this period are available at https://doi.org/10.5281/zenodo.12752190 and https://doi.org/10.5281/zenodo.12734049. Model codes, scripts for compiling the model, and sample CPP header files and runtime parameter files (namelists) for physics-only simulations are available at https://doi.org/10.5281/zenodo.12752091. CPP header and runtime parameter files for the biogeochemistry module are available upon request. Sample output files (from the physics and biogeochemistry modules) are available at https://doi.org/10.5281/zenodo.12744506 and https://doi.org/10.5281/zenodo.12746262. https://creativecommons.org/licenses/by/4.0/legalcode

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