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den Heyer, Cornelia 2021-09-17 <p>Change in breeding phenology is often a response to environmental forcing, but less is known of the mechanism underlying such changes and their fitness consequences. Here we report on changes in the breeding phenology from a 27-year longitudinal study (1991-2017) of individually marked, known-aged grey seals (Halichoerus grypus) on Sable Island, Nova Scotia, Canada.</p> <p>We used Generalized Linear Mixed Models to test hypotheses about the influence of fixed factors (maternal age, parity, previous reproductive success, pup sex, colony density, AMO, NAO, and SST) and a random factor (female identity) on parturition dates. We also examined the consequences of the shift in birthdates on maternal energy investment in offspring as measured by pup weaning mass. Birthdates were known for 2768 pups of 660 known-age females. For 494 females with ≥ 2 parturition dates, repeatability as measured by the intraclass correlation was high (mean=0.66). 87% of the variation in birthdates was explained by a mixed effects model that included intrinsic and extrinsic fixed effects. Most of the explained variation was associated with the random effect of female identity.</p> <p>Parity was the most important intrinsic fixed effect, with inexperienced mothers giving birth later in the season than multiparous females. Over almost 3 decades, mean birthdates advanced by 15 days. The mixed model with intrinsic effects and population size, the detrended AMO from the previous year and mean NAO in the previous 3 years explained 80 % of the variation with 21 % of variation from the fixed effects. Both primiparous and multiparous individuals responded to the climate forcing, and there was strong evidence for heterogeneity in the response. The shift in birthdates did not impact pup weaning mass. Females exhibited considerable phenotypic plasticity indicating that climate driven changes in breeding phenology may not always have measurable consequences.</p>
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Kess, Tony; Einfeldt, Anthony; Wringe, Brendan; Lehnert, Sarah; Layton, Kara; McBride, Meghan; Robert, Dominique; Fisher, Jonathan; Le Bris, Arnault; den Heyer, Cornelia; Shackell, Nancy; Ruzzante, Daniel; Bentzen, Paul; Bradbury, Ian 2021-02-19 <p class="western" style="text-indent:1.27cm;text-align:left;"><span style="background:transparent none 0% 0%;">Characterizing the nature of genetic differentiation among individuals and populations and its distribution across the genome is increasingly important to inform both conservation and management of exploited species. Atlantic Halibut (<i>Hippoglossus hippoglossus</i>) is an ecologically and commercially important fish species, yet knowledge of population structure and genomic diversity in this species remains lacking. Here, we use restriction-site associated DNA sequencing and a chromosome-level genome assembly to identify over 86,000 single nucleotide polymorphisms mapped to 24 chromosome-sized scaffolds, genotyped in 734 individuals across the Northwest Atlantic. We describe subtle but significant genome-wide regional structuring between the Gulf of St. Lawrence and adjacent Atlantic continental shelf. However, the majority of genetic divergence is associated with a large putative chromosomal rearrangement (5.74 megabases) displaying high differentiation and linkage disequilibrium, but no evidence of geographic variation. Demographic reconstructions suggest <font color="#000000">periods of expansion</font> coinciding with glacial retreat, and more recent declines in N<sub>e</sub>. This work highlights the utility of genomic data to identify multiple sources of genetic structure and genomic diversity in commercially exploited marine species. </span></p> <p class="western" style="text-align:left;"> </p>